Increasing Computational Protein Design Literacy through Cohort-based Learning for Undergraduate Students

Undergraduate research experiences can improve student success in graduate education and STEM careers. During the COVID-19 pandemic, many undergraduate researchers lost their work− study research positions due to interruption of in-person research activities. This imposed a financial burden on the students and eliminated an important learning opportunity.

To address these challenges, a paid, fully remote, cohort-based research curriculum was created in computational protein design. This curriculum used existing protein design methods as a platform to first educate and train undergraduate students and then to test research hypotheses. In the first phase, students learned computational methods to assess the stability of designed protein assemblies. In the second phase, students used a larger data set to identify factors that could improve the accu racy of current protein design algorithms.

This cohort-based program created valuable new research opportunities for undergraduates and enhanced their feeling of connection with the lab. Students learned transferable and useful skills such as literature review, programming basics, data analysis, hypothesis testing, and scientific communication. This program provides a model of structured computational research training opportunities for undergraduate researchers in any field for organizations looking to expand educational access.

Designing Materials to Revolutionize and Engineer our Future (DMREF)